convert from base to decimal

.gitignore

@@ -1,5 +1,5 @@
 /.clj-kondo/
-/.cpcache/
+/**/.cpcache/
 /.lsp/
 /target/
 .nrepl-port

README.md

@@ -152,6 +152,7 @@ clj-totp.sh import <alias> "<url>"
 - [x] Native compilation script corrections
 
 ### v2
+- [x] Restructurate as a multiproject
 - [ ] REST API
 - [ ] User management
 - [ ] Robust BD backend (H2, datomic, or similar)
@@ -176,14 +177,14 @@ The first step is to install Java JDK, version 11 or newer (version 21 recommend
 
 To execute manually the main function, simple use the `:run` alias:
 
-```clojure
+```bash
-clojure -M:run <commands and parameters>
+clojure -M:run/cli <commands and parameters>
 ```
 
 To build the uberjar:
 
-```clojure
+```bash
-clojure -T:build uber
+clojure -T:build :uber/cli
 ```
 
 There is a utility script to build a native executable using Graal VM. Please, edit the script and

build.clj

@@ -1,37 +1,174 @@
 (ns build
-  (:require [clojure.tools.build.api :as b]))
+  (:refer-clojure :exclude [test])
+  (:require [clojure.tools.build.api :as b]
+            [clojure.java.io :as io]
+            [clojure.pprint :as pp]
+            [clojure.java.basis :as basis]))
 
-(def lib 'es.rcorral/clj-totp)
+(def lib-group "es.rcorral")
-(def version (format "1.2.%s" (b/git-count-revs nil)))
+(def artifact-prefix "clj-totp")
-(def target-dir "target")
+(def subprojs-base "projects")
-(def class-dir (str target-dir "/classes"))
+(def curr-version (format "2.0.%s" (b/git-count-revs nil)))
-(def uber-file (format "target/%s-%s-standalone.jar" (name lib) version))
-
-;; delay to defer side effects (artifact downloads)
-(def basis (delay (b/create-basis {:project "deps.edn"})))
-
-(defn clean [_]
-  (b/delete {:path "target"}))
-
-(defn compile-java [_]
-  (b/javac {:src-dirs ["java"]
-            :class-dir class-dir
-            :basis @basis
-            :javac-opts ["-source" "11" "--target" "11" "-proc:none"]}))
 
 
+;; Builds artifact's full descriptor for each subproject
+(defn lib [subproj]
+  (symbol (str lib-group "/" artifact-prefix "-" subproj )))
+
+
+;; Basis for each subproject, using their own deps.edn
+;; Injects :extra-deps from :build as additional dependencies
+(defn basis [subproj]
+  (delay (b/create-basis {:project (str subprojs-base "/" subproj "/deps.edn")
+                          ;; Inject extra deps as deps
+                          :extra {:deps (get-in (basis/initial-basis) [:aliases :build :extra-deps])}
+                          })))
+
+
+;; Show basis generated for a subproject
 #_{:clojure-lsp/ignore [:clojure-lsp/unused-public-var]}
-(defn uber [_]
+(defn show-basis [subproj]
-  (clean nil)
+  (println (with-out-str
-  (b/copy-dir {:src-dirs ["src"]
+             (pp/pprint
-               :target-dir class-dir})
+              @(basis subproj)
-  (b/copy-file {:src "resources/clj-totp.sh"
+              ;(basis/initial-basis)
-                :target "target/clj-totp.sh"})
+              ))))
-  (compile-java nil)
+
-  (b/compile-clj {:basis @basis
+(comment 
-                  :ns-compile '[totp.app]
+  (pp/pprint (keys (basis/initial-basis)))
-                  :class-dir class-dir})
+  (pp/pprint (:deps (basis/initial-basis)))
-  (b/uber {:class-dir class-dir
+  (pp/pprint (:libs (basis/initial-basis)))
-           :uber-file uber-file
+  (pp/pprint (sort (keys (:aliases (basis/initial-basis)))))
-           :basis @basis
+  (get-in (basis/initial-basis) [:aliases :build :extra-deps])
-           :main 'totp.app}))
+  )
+
+;; Target dir for each subproject
+(defn target-dir [subproj]
+  (str "target/" subproj))
+
+
+;; Path for compiled classes
+(defn class-dir [subproj]
+  (str (target-dir subproj) "/" "classes"))
+
+
+;; Jar file for each subproject. :uber type adds -standalone suffix
+(defn jar-file [subproj version type]
+  (format "target/%s-%s-%s%s.jar" artifact-prefix subproj version
+          (if (= type :uber) "-standalone" "")))
+
+
+;; Clean target dir for subproject
+(defn clean [{:keys [subproj]}]
+  (b/delete {:path (target-dir subproj)})
+  (println "Project" subproj "cleaned"))
+
+
+;; Compile java classes, only if java subdir exists
+(defn compile-java [subproj]
+  (let [java-dir (str subprojs-base "/" subproj "/java")]
+    (when (.exists (io/file java-dir))
+      (println "Compiling java code for" subproj)
+      (b/javac {:src-dirs [java-dir]
+                :class-dir (class-dir subproj)
+                :basis @(basis subproj)
+                :javac-opts ["-source" "11" "--target" "11" "-proc:none"]}))))
+
+
+;; Create a jar file
+(defn jar
+  "Build a simple jar file, with no dependencies included."
+  [{:keys [subproj version]
+    :or {version curr-version}}]
+  (let [target-dir (target-dir subproj)
+        class-dir (class-dir subproj)
+        src-dir (str subprojs-base "/" subproj "/src")
+        resources-dir (str subprojs-base "/" subproj "/resources")
+        basis (basis subproj)
+        jar-file (jar-file subproj version :plain)]
+    ;; Clean only class dir
+    (b/delete {:path class-dir})
+    ;; Copy code
+    (b/copy-dir {:src-dirs [src-dir]
+                 :target-dir class-dir})
+    ;; Copy resources
+    (b/copy-dir {:src-dirs [resources-dir]
+                 :target-dir target-dir})
+    ;; Compile java code, if exists
+    (compile-java subproj)
+    ;; Build jar
+    (b/jar {:class-dir class-dir
+            :basis @basis
+            :jar-file jar-file
+            :lib (lib subproj)
+            :version version})
+    (println "Generated jar file:" jar-file)))
+
+
+;; Create an uber jar, with all dependencies inside
+#_{:clojure-lsp/ignore [:clojure-lsp/unused-public-var]}
+(defn uber
+  "Build a uberjar with all dependencies included"
+  [{:keys [subproj version main-ns]
+    :or {version curr-version}}]
+  (let [target-dir (target-dir subproj)
+        basis (basis subproj)
+        class-dir (class-dir subproj)
+        src-dir (str subprojs-base "/" subproj "/src")
+        resources-dir (str subprojs-base "/" subproj "/resources")
+        uber-file (jar-file subproj version :uber)]
+    ;(println "Using basis: ")(show-basis subproj)
+    (b/delete {:path class-dir})
+    (b/copy-dir {:src-dirs [src-dir]
+                 :target-dir class-dir})
+    (b/copy-dir {:src-dirs [resources-dir]
+                 :target-dir target-dir})
+    (compile-java subproj)
+    (b/compile-clj {:basis @basis
+                    :src-dirs [src-dir] :class-dir class-dir})
+    (b/uber {:class-dir class-dir
+             :uber-file uber-file
+             :basis @basis
+             :main main-ns})
+    (println "Generated uberjar executable:" uber-file)))
+
+
+;; Multimethod to get the name of all subdirs in a dir.
+;; Accepts strings or files
+(defmulti get-subdirs type)
+
+(defmethod get-subdirs
+  java.lang.String [dir]
+  (get-subdirs (io/file dir)))
+
+(defmethod get-subdirs
+  java.io.File [dir]
+  (if (.isDirectory dir)
+    (filter #(.isDirectory %) (.listFiles dir))
+    (println "Directory" subprojs-base "doesn't exists!")))
+
+
+;; Get the name of all subdir in a given directory
+(defn get-subdir-names
+  "Get a list projects in the 'projects' directory"
+  [dir-name]
+  (map #(.getName %) (get-subdirs dir-name)))
+
+(comment
+  (get-subdirs "projects")
+  (get-subdirs (io/file "projects"))
+  (get-subdir-names "projects")
+)
+
+
+;; Generate jar files for all projects
+(defn jar-all
+  "Build jar files for all projects"
+  [& {:keys [version]
+      :or {version curr-version}}]
+  (dorun (map #(jar {:subproj % :version version}) (get-subdir-names subprojs-base))))
+
+(comment 
+  (jar-all )
+
+)

compile_proto.sh

@@ -1,4 +1,4 @@
 #!/bin/env sh
 
-protoc --java_out java/protoc/ resources/proto/otpauth-migration.proto
+protoc --java_out projects/core/java/protoc/ projects/core/resources/proto/otpauth-migration.proto
 #javac -cp resources/protobuf-java-3.25.8.jar -d target/classes/proto src/OtpauthMigration.java

deps.edn

@@ -1,24 +1,68 @@
 {:paths   ["src" "resources" "target/classes"]
  :deps    {org.clojure/clojure                 {:mvn/version "1.12.1"}
-           io.github.clojure/tools.build       {:mvn/version "0.10.10"}
+           ;; Native image (GraalVM). Tutorial: https://shagunagrawal.me/posts/setup-clojure-with-graalvm-for-native-image/
-           mvxcvi/alphabase                    {:mvn/version "3.0.185"} ;; https://github.com/greglook/alphabase
+           com.github.clj-easy/graal-build-time {:mvn/version "1.0.5"}
-           cli-matic/cli-matic                 {:mvn/version "0.5.4"}   ;; https://github.com/l3nz/cli-matic
+           ;; Local subprojects
-           com.github.clj-easy/graal-build-time {:mvn/version "1.0.5"}  ;; Tutorial: https://shagunagrawal.me/posts/setup-clojure-with-graalvm-for-native-image/
+           clj-totp/core {:local/root "projects/core"}
-           ;; Protobuf for java
+           clj-totp/cli  {:local/root "projects/cli"}
-           com.google.protobuf/protobuf-java   {:mvn/version "3.25.8"}
+           clj-totp/web  {:local/root "projects/web"}
-           ;; Progress bar
+           clj-totp/gui  {:local/root "projects/gui"}
-           com.github.pmonks/spinner           {:mvn/version "2.0.284"}
            }
 
- :aliases {;; Execute the app
+ :aliases {;; Execute the app.
-           :run      {:main-opts   ["-m" "totp.app"]}
+           :run {:main-opts ["-m" "totp.app"]}
+           ;:run {:exec-fn totp.app/-main}
+
+           ;; Execute the app (prepared for more subprojects)
+           :run/cli {:main-opts ["-m" "totp.app"]}
+
+           :run/gui {:main-opts ["-m" "totp.gui"]}
 
            ;; Kaocha runner. You can use the 'kaocha' wrapper located in ~/bin/kaocha
-           :test     {:extra-paths ["test"]
+           ;; Check test.edn for kaocha runner's config
-                      :extra-deps  {lambdaisland/kaocha {:mvn/version "1.91.1392"}}
+           :test     {:extra-deps  {lambdaisland/kaocha {:mvn/version "1.91.1392"}
+                                    lambdaisland/kaocha-cloverage {:mvn/version "1.1.89"}}
                       :main-opts   ["-m" "kaocha.runner"]}
 
            ;; Run with clj -T:build function-in-build
            :build    {:deps {io.github.clojure/tools.build {:mvn/version "0.10.10"}}
-                      :ns-default build}}}
+                      ;; Used by all compilations
+                      :extra-deps {clj-totp/core {:local/root "projects/core"}}
+                      :ns-default build}
+
+           ;; Aliases for easy building
+           :build/core {:deps {io.github.clojure/tools.build {:mvn/version "0.10.10"}}
+                        :ns-default build
+                        :exec-fn jar
+                        :exec-args {:subproj "core"}}
+
+           :build/cli {:deps {io.github.clojure/tools.build {:mvn/version "0.10.10"}
+                              clj-totp/core {:local/root "projects/core"}}
+                       :ns-default build
+                       :exec-fn jar
+                       :exec-args {:subproj "cli"}}
+
+           :build/web {:deps {io.github.clojure/tools.build {:mvn/version "0.10.10"}}
+                       :replace-deps {clj-totp/core {:local/root "projects/core"}}
+                       :ns-default build
+                       :exec-fn jar
+                       :exec-args {:subproj "web"}}
+           
+           :build/gui {:deps {io.github.clojure/tools.build {:mvn/version "0.10.10"}}
+                       :replace-deps {clj-totp/core {:local/root "projects/core"}}
+                       :ns-default build
+                       :exec-fn jar
+                       :exec-args {:subproj "gui"}}
+
+           ;; Build the three libraries
+           :build/all {:deps {io.github.clojure/tools.build {:mvn/version "0.10.10"}}
+                       :replace-deps {clj-totp/core {:local/root "projects/core"}}
+                       :ns-default build
+                       :exec-fn jar-all}
+
+           ;; Build uber jar for CLI app
+           :uber/cli {:deps {io.github.clojure/tools.build {:mvn/version "0.10.10"}}
+                      :ns-default build
+                      :exec-fn uber
+                      :exec-args {:subproj "cli" :main-ns "totp.app"}}}}
 

doc/db.plantuml

@@ -0,0 +1,34 @@
+@startuml
+' configuration
+skinparam linetype ortho
+
+entity "user" as user {
+        id: number
+        --
+        login: varchar(64)
+        passw: varchar(512)
+        active: shortint
+        desc: varchar(512)
+        config: varchar(512)
+}
+
+entity "app" as app {
+        id: number
+        --
+        name: varchar(32)
+        desc: varchar(512)
+        secret: varchar(512)
+        period: int
+        config: varchar(512)
+}
+
+entity "user_app" as user_app {
+        user_id: number
+        app_id: number
+        --
+}
+
+user ||--o{ user_app
+app ||--o{ user_app
+
+@enduml

native.sh

@@ -4,7 +4,7 @@ NATIVE=~/.sdkman/candidates/java/21.0.2-graalce/bin/native-image
 BIN_FILE=totp
 
 echo "Creating uberjar"
-#clojure -T:build uber
+clojure -T:build uber
 UBERJAR=$(realpath --relative-to=target target/clj-totp-*-standalone.jar)
 
 echo "Creating native image"
@@ -27,4 +27,4 @@ cp target/$BIN_FILE ~/bin
 echo "Copied to ~/bin/$BIN_FILE"
 
 echo "Compress executable for distribution"
-xz target/$BIN_FILE
+xz -fv target/$BIN_FILE

projects/cli/deps.edn

@@ -0,0 +1,15 @@
+{:paths   ["src" "resources" "target/classes"]
+ :deps    {;clj-totp/core                       {:local/root "../core"}
+           org.clojure/clojure                 {:mvn/version "1.12.1"}
+           cli-matic/cli-matic                 {:mvn/version "0.5.4"}   ;; https://github.com/l3nz/cli-matic
+           ;; Progress bar
+           com.github.pmonks/spinner           {:mvn/version "2.0.284"}}
+
+ :aliases {;; Execute the app
+           ;:run      {:main-opts   ["-m" "totp.app"]}
+
+           ;; Kaocha runner. You can use the 'kaocha' wrapper located in ~/bin/kaocha
+           :test     {:extra-paths ["test"]
+                      :extra-deps  {lambdaisland/kaocha {:mvn/version "1.91.1392"}}
+                      :main-opts   ["-m" "kaocha.runner"]}}}
+

projects/cli/tests.edn

@@ -0,0 +1 @@
+#kaocha/v1 {}

projects/core/.cpcache/425892293.main

@@ -0,0 +1,2 @@
+-m
+kaocha.runner

projects/core/deps.edn

@@ -0,0 +1,12 @@
+{:paths   ["src" "resources" "target/classes"]
+ :deps    {org.clojure/clojure                 {:mvn/version "1.12.1"}
+           mvxcvi/alphabase                    {:mvn/version "3.0.185"} ;; https://github.com/greglook/alphabase
+           ;; Protobuf for java
+           com.google.protobuf/protobuf-java   {:mvn/version "3.25.8"}
+           }
+
+ :aliases {;; Kaocha runner. You can use the 'kaocha' wrapper located in ~/bin/kaocha
+           :test     {:extra-paths ["test"]
+                      :extra-deps  {lambdaisland/kaocha {:mvn/version "1.91.1392"}}
+                      :main-opts   ["-m" "kaocha.runner"]}}}
+

projects/core/src/totp/core.clj

@@ -99,3 +99,29 @@
                    (rem (int (m/pow 10 digits))))))))
   ([secret]
    (get-otp secret "sha1" 6 30)))
+
+
+(defn calculate-offset-millis
+  [period]
+  (let [step-millis (* 1000 period)
+        now         (System/currentTimeMillis)]
+    (int (rem now step-millis))))
+
+
+(defn calculate-delay-millis
+  [period]
+  (let [step-millis (* 1000 period)]
+    (- step-millis (calculate-offset-millis period))))
+
+
+(comment
+  (let [now (System/currentTimeMillis)
+        off (calculate-offset-millis 30)
+        delay (calculate-delay-millis 30)
+        ]
+    (println "Now:   " (int (/ now 1000)) "secs" now "millis")
+    (println "Offset:" (int (/ off 1000)) "secs" off "millis")
+    (println "Delay: " (int (/ delay 1000)) "secs" delay "millis")
+    (println "Total: " (+ (int (/ off 1000)) (int (/ delay 1000))) "secs" (+ delay off) "millis")
+    )
+  )

projects/core/src/totp/data.clj

@@ -89,11 +89,16 @@
 
 (defn list-apps
   [cfg]
-  (map :name
+  (->> cfg
-       (filter #(contains? % :name) cfg)))
+       (filter #(contains? % :name))
+       (map :name)))
 
 (comment
-  (list-apps (load-config)))
+  (list-apps (load-config))
+  (with-config #_{:clj-kondo/ignore [:unresolved-symbol]}
+               (list-apps cfg))
+  )
+
 
 (defn get-app
   [cfg name]

projects/core/src/totp/otp_import.clj

@@ -0,0 +1,186 @@
+(ns totp.otp-import
+  (:require [alphabase.bytes :as b]
+            [alphabase.base16 :as hex]
+            [alphabase.base64 :as b64]
+            [alphabase.base2 :as b2]
+            [clojure.math :as m]
+            [clojure.string :as s]))
+
+;; Original description of the export protocol uses Google's Protocol Buffers
+;; https://protobuf.dev/
+
+(comment
+  (let [encoded "CkkKEJ0M4MyHfITKCwCfqPIttjESFHJ1YmVuY2pAMThCMTY5RDVGRjAwGgRTTldMIAEoATACQhMzYjkxMDQxNzI3NzgzNDIzNDYyEAIYASAA"
+        decoded (b64/decode encoded)]
+    (print (hex/encode decoded))
+    (print (b/to-string decoded))
+  )
+)
+
+(defn len-bits
+  "How may blocks of n bits are needed to encode this number?
+   
+   We use the following formula, for calculating the number of digits required
+   to encode the number n in the base b:
+
+       digits = ceil ( log_n ( x + 1 ) )
+   "
+  [x n]
+  (case x
+    nil 0 ;; nill is encoded with zero bytes
+    0 1   ;; One block to zero
+    9223372036854775807 (len-bits (dec x) n) ;; Beware the overflow!! it's best to lose some precision
+    (when (and (>= x 0) (some? n) (> n 0))
+      (int (m/ceil (/ (m/log (inc x)) (m/log (m/pow 2 n))))))))
+
+(comment
+  (len-bits 513 8)
+  (len-bits Long/MAX_VALUE 8)
+  (len-bits (dec Long/MAX_VALUE) 8)
+  )
+
+
+(defn len-bytes
+  "How may bytes are needed to encode this number?"
+  [x]
+  (len-bits x 8))
+
+
+(defn integer>bytes
+  "Converts an integer to a byte array"
+  [x]
+  (when x (let [len (len-bytes x) 
+                hex-len (* 2 len)]
+            (hex/decode (String/format (str "%0" hex-len "x") (into-array [x]))))))
+
+(comment
+  (integer>bytes 513)
+  10r3
+  3r10
+  )
+
+
+(defn decimal-to-base
+  "Converts a decimal number to an arbitrary base. Each digit is encoded as an 
+   integer with value between 0 and base-1.
+   
+   For example, 10 in base 4 will be encoded as:
+       [2 0 2]
+   , 127 in base 126 will be:
+       [1 1]
+   and so on.
+
+   We will use the sucessive division method: do a integer division of the number
+   to the base until the quotient is zero, and take the reminders backwards. For
+   example, if we want to converto 127 to base 5:
+
+       127 / 5 = 25 rem 2
+        25 / 5 =  5 rem 0
+         5 / 5 =  1 rem 0
+         1 / 5 =  0 rem 1
+   
+   so, 127 in base 5 is 1002.
+   "
+  ([n base]
+   (decimal-to-base n base true))
+  ([n base reverse?]
+   (when (and n base)
+     (if (or (nil? n) (nil? base) (zero? n) (zero? base)) ;; Allways [0] for base zero or number zero
+       [0]
+       (loop [acc []
+              x n]
+         (if (zero? x)
+           (vec (if reverse? (reverse acc) acc)) ;; When x is zero, we have finished
+           (recur
+            (conj acc (rem x base)) ;; Accumulate the remainder
+            (quot x base))))))))      ;; Pass the quotient to the next step
+
+(comment
+  (decimal-to-base 8 2)
+  2r1000
+  )
+
+(defn base-to-decimal
+  "Converts from an array with values in an arbitrary base into decimal values"
+  [n base]
+  (if (or (nil? n) (nil? base) (zero? (count n)))
+    0
+    (int (reduce-kv
+          (fn [acc k v]
+            (+ acc (* v (m/pow base k))))
+          0 (vec (reverse n))))))
+
+
+(comment
+  (reduce-kv #(+ %1 (* %3 (m/pow 2 %2))) 0 [1 0 0 0])
+
+  (reduce-kv
+   (fn [acc k v]
+     (+ acc (* v (m/pow 2 k))))
+   0 (vec (reverse [1 0 0 0])))
+  
+  (base-to-decimal [1 0 0 0] 2)
+  )
+
+(defn int->varint
+  "Converts a integer value to a varint, that is encoded in 7 bits, where the first
+   bit is used to indicate if there are more bytes.
+   
+   For example, the number 255 is usually encoded in a byte as follows:
+       11111111
+   but in a varint it will turn to:
+       10000001 01111111
+   
+   First byte has the MSB set to 1, because there is another byte after it. The
+   second byte is the last one, so the MSB is set to 0.
+
+   The result is a byte array.
+   "
+  [x]
+  (let [b128 (decimal-to-base x 128 false)]
+    (byte-array (conj
+                 (vec (map #(bit-or 2r10000000 %)  (butlast b128)))
+                 (bit-and 2r01111111 (peek b128))))))
+
+
+(defn to-fancy-bin
+  "Return a string with bits from number in a fancy manner"
+  [x]
+  (s/join " "
+          (map s/join
+               (partition 8 (b2/encode (byte-array (map #(b/to-byte %) x)))))))
+
+
+(defn to-fancy-hex
+  "Return a string with hex values from number in a fancy manner"
+  ([x]
+   (to-fancy-hex x 2))
+  ([x group-size]
+   (s/join " "
+           (map s/join
+                (partition group-size (hex/encode (byte-array (map #(b/to-byte %) x))))))))
+
+
+
+(comment
+  (hex/decode (String/format "%08x" (into-array [1023])))
+
+  (to-fancy-bin [150] )
+  
+  (to-fancy-bin (int->varint 150))
+  (to-fancy-bin (int->varint 151))
+
+  (to-fancy-hex (int->varint 150))
+  (to-fancy-hex (int->varint 151) 4)
+
+
+  (to-fancy-bin (int->varint Long/MAX_VALUE))
+  (to-fancy-bin (int->varint (dec Long/MAX_VALUE)))
+
+  (to-fancy-hex (int->varint (dec Long/MAX_VALUE)))
+  
+  (to-fancy-bin [2r10010110 2r00000001])
+
+  [2r10010110 2r00000001]
+  [2r0010110 2r0000001]
+  )

projects/core/target/clj-totp.sh

@@ -0,0 +1,8 @@
+#!/usr/bin/env sh
+
+JAVA_EXECUTABLE=java
+UBER_JAR=$(realpath clj-totp-*-standalone.jar)
+OPTS="-Xms256m -Xmx256m -client -Dclojure.spec.skip-macros=true"
+
+
+$JAVA_EXECUTABLE $OPTS -jar $UBER_JAR $@

projects/core/test/totp/otp_import_test.clj

@@ -0,0 +1,83 @@
+(ns totp.otp-import-test
+  #_{:clj-kondo/ignore [:refer-all]}
+  (:require [clojure.test :refer :all]
+            [totp.otp-import :refer :all]
+            [alphabase.bytes :as b]
+            [alphabase.base16 :as hex]
+            [alphabase.base64 :as b64]
+            [alphabase.base32 :as b32]))
+
+
+(deftest len-bits-test
+  (testing "Check required number of blocks to encode a number in n bits"
+    (is (nil? (len-bits 10 nil)))
+    (is (= 0 (len-bits nil 10)))
+    (is (= 1 (len-bits 1 2)))
+    (is (= 2 (len-bits 10 2)))
+    (is (= 2 (len-bits 15 2)))
+    (is (= 3 (len-bits 16 2)))
+    (is (= 1 (len-bits 255 8)))
+    (is (= 2 (len-bits 255 7)))
+    )
+  )
+
+
+(deftest len-bytes-test
+  (testing "Check required number of bytes to encode a number"
+    (is (= 0 (len-bytes nil)))
+    (is (= 1 (len-bytes 0)))
+    (is (= 1 (len-bytes 1)))
+    (is (= 1 (len-bytes 255)))
+    (is (= 2 (len-bytes 256)))
+    (is (= 2 (len-bytes 65535)))
+    (is (= 3 (len-bytes 65536)))
+  )
+)
+
+
+(deftest integer>bytes-test
+  (testing "Convert several ints to a byte array"
+    (is (nil? (integer>bytes nil)))
+    (is (b/bytes= (b/init-bytes [0]) (integer>bytes 0)))
+    (is (b/bytes= (b/init-bytes [1]) (integer>bytes 1)))
+    (is (b/bytes= (b/init-bytes [-1]) (integer>bytes 255)))
+    (is (b/bytes= (b/init-bytes [1 0]) (integer>bytes 256)))
+    (is (b/bytes= (b/init-bytes [-1 -1]) (integer>bytes 65535)))
+    (is (b/bytes= (b/init-bytes [127 -1 -1 -1 -1 -1 -1 -1]) (integer>bytes Long/MAX_VALUE)))
+  )
+)
+
+
+(deftest decimal-to-base-test
+  (testing "Convert from decimal base to an arbitrary base"
+    (is (= [0] (decimal-to-base 10 nil)))
+    (is (= [0] (decimal-to-base nil 10)))
+    (is (= [0] (decimal-to-base 0 2)))
+    (is (= [0] (decimal-to-base 2 0)))
+    (is (= [1 0 0 0] (decimal-to-base 8 2)))
+    (is (= [2 2] (decimal-to-base 8 3)))
+    (is (= [2 0] (decimal-to-base 8 4)))
+    (is (= [1 3] (decimal-to-base 8 5)))
+    (is (= [3 1] (decimal-to-base 8 5 false)))
+    (is (= [0] (decimal-to-base 0 5)))
+    )
+  )
+
+(deftest base-to-decimal-test
+  (testing "Convert from arbitrary base to decimal"
+    (is (zero? (base-to-decimal nil 2)))
+    (is (zero? (base-to-decimal [] 2)))
+    (is (zero? (base-to-decimal [1] nil)))
+    (is (= 8 (base-to-decimal [1 0 0 0] 2)))
+    (is (= 8 (base-to-decimal [2 2] 3)))
+    (is (= 8 (base-to-decimal [2 0] 4)))
+    (is (= 8 (base-to-decimal [1 3] 5)))
+    )
+  )
+
+(deftest decimal-base-decimal-test
+  (testing "Check if convert from decimal to a base and back preserves the original number"
+    (is (= 8 (base-to-decimal (decimal-to-base 8 2) 2)))
+    (is (= 127 (base-to-decimal (decimal-to-base 127 2) 2)))
+    (is (= 417 (base-to-decimal (decimal-to-base 417 13) 13)))
+    ))

projects/core/tests.edn

@@ -0,0 +1 @@
+#kaocha/v1 {}

projects/gui/deps.edn

@@ -0,0 +1,7 @@
+{:paths   ["src" "target/classes"]
+ :deps    {;;org.clojure/clojure {:mvn/version "1.12.1"}
+           cli-matic/cli-matic {:mvn/version "0.5.4"}   ;; https://github.com/l3nz/cli-matic
+           ;; GUI
+           seesaw/seesaw {:mvn/version "1.5.0"}}
+}
+

projects/gui/src/totp/gui.clj

@@ -0,0 +1,166 @@
+(ns totp.gui
+  #_{:clj-kondo/ignore [:refer-all]}
+  (:require [totp.core :refer :all]
+            [totp.data :refer :all]
+            [clojure.pprint :as pp]
+            [seesaw.core :refer :all]
+            [seesaw.mig :refer :all]
+            [seesaw.clipboard :as cp]
+            [seesaw.dev :refer :all])
+  (:import [java.util Date TimerTask Timer]))
+
+
+
+(defn content-test
+  []
+  (let [choose (fn [e] (alert "I should open a file chooser"))]
+    (flow-panel
+     :items ["File"                                 [:fill-h 5]
+             (text (System/getProperty "user.dir")) [:fill-h 5]
+             (action :handler choose :name "...")])))
+
+
+(defn content-test2
+  [name category date comment]
+  (mig-panel
+   :constraints ["wrap 2"
+                 "[shrink 0]20px[200, grow, fill]"
+                 "[shrink 0]5px[]"]
+   :items [["name:"] [(text (or name     ""))]
+           ["category:"] [(text (or category ""))]
+           ["date:"] [(text (or date     ""))]
+           ["comment:"] [(text (or comment  ""))]]))
+
+
+(defn copy-handler
+  "Copies TOTP from text with id field-id, to system clipboard"
+  [field-id e]
+  (let [b-name (str "#" field-id)
+        b-obj (select (to-root e) [(keyword b-name)])
+        b-text (config b-obj :text)] 
+    (println "Copying text value: " b-text)
+    (cp/contents! b-text)
+  ))
+
+
+(defn make-otp-list
+  "Make panel with OTPs"
+  []
+  (mig-panel
+   :constraints ["wrap 3"
+                 "[shrink 0]20px[200, grow, fill]10px[shrink 0]"]
+   :items (let [apps (with-config (filter some? #_{:clj-kondo/ignore [:unresolved-symbol]} cfg))
+                ]
+            (reduce (fn [acc a]
+                      (let [{:keys [name secret algorithm digits period]} a
+                            field-id (str "field-totp-" name)]
+                        (-> acc
+                            (conj [name])
+                            (conj [(text :text (get-otp secret algorithm digits period)
+                                         :editable? false
+                                         :id field-id)])
+                            (conj [(action :name "copy" 
+                                           :handler (partial copy-handler field-id) 
+                                           :command (str "cmd-" name))]))))
+                    [] apps))))
+
+(comment
+  (make-otp-list)
+  )
+
+
+(defn make-time-bar
+  "Make the progress bar with the remaining time"
+  [init-val]
+  (border-panel
+   :hgap 5
+   :center (progress-bar :id "timer-bar"
+                         :value init-val
+                         :max 30)
+   :east   (text :id "timer-text"
+                 :text init-val
+                 :editable? false
+                 :columns 2
+                 :halign :right)
+  ))
+
+
+(defn make-frame-content
+  []
+  (border-panel :hgap 10 :vgap 10
+                :center (make-otp-list)
+                :north  (make-time-bar (int(/ (calculate-offset-millis 30) 1000)))
+                ;:south  "SOUTH"
+                ;:east   "EAST"
+                ;:west   "WEST"
+                ))
+
+
+(defn make-frame
+  "Make main frame's content"
+  []
+  (frame :title "TOTP",
+         :content (make-frame-content)
+         ;:minimum-size [320 :by 240]
+         ;;:on-close :exit
+         :on-close :dispose))
+
+
+(defn update-totps
+  "Update all totps"
+  [root]
+  (let [apps (with-config (filter some? #_{:clj-kondo/ignore [:unresolved-symbol]} cfg))]
+    (doseq [app apps]
+      (let [{:keys [name secret algorithm digits period]} app
+            field-id (str "field-totp-" name)
+            field (select root [(keyword (str "#" field-id))])
+            current-otp (get-otp secret algorithm digits period)]
+        (println "Updating" field-id "with otp" current-otp)
+        (config! field :text current-otp)))))
+
+
+(defn update-progress
+  [root]
+  (let [time-bar (select root [:#timer-bar])
+        time-text (select root [:#timer-text])
+        offset (inc (int (/ (calculate-offset-millis 30) 1000)))]
+    (println "Updating at at" (System/currentTimeMillis))
+    (config! time-bar :value offset)
+    (config! time-text :text offset)
+    (when (= 1 offset)
+      (println "update TOTP")
+      (update-totps root))
+  ))
+
+
+(defn start-updater
+  [root]
+  (let [now (System/currentTimeMillis)
+        now-seconds (int (/ now 1000))
+        delay (- 1000 (- now (* 1000 now-seconds)))]
+    (. (new Timer) (scheduleAtFixedRate
+                    (proxy [TimerTask] []
+                      (run [] (update-progress root)))
+                    delay 1000))
+    (println "Now" now "Delay" delay)
+  ))
+
+
+(defn -main [& args]
+  (native!)
+  (invoke-later
+   (-> (make-frame)
+       pack!
+       show!
+       start-updater))
+  (println "Gui started"))
+
+
+(comment
+  ;; This kills your REPL connection
+  (-main)
+
+  (show-options (frame))
+  (show-options (text))
+
+  )

projects/web/deps.edn

@@ -0,0 +1,18 @@
+{:paths   ["src" "resources" "target/classes"]
+ :deps    {;clj-totp/core                       {:local/root "../core"}
+           org.clojure/clojure                 {:mvn/version "1.12.1"}
+           ;; For SQLite
+           com.github.seancorfield/next.jdbc   {:mvn/version "1.3.1048"}
+           org.xerial/sqlite-jdbc              {:mvn/version "3.50.3.0"}
+           ;; For Datomic local
+           com.datomic/local                   {:mvn/version "1.0.291"};; https://docs.datomic.com/datomic-local.html
+           }
+
+ :aliases {;; Execute the app
+           ;:run      {:main-opts   ["-m" "totp.app"]}
+
+           ;; Kaocha runner. You can use the 'kaocha' wrapper located in ~/bin/kaocha
+           :test     {:extra-paths ["test"]
+                      :extra-deps  {lambdaisland/kaocha {:mvn/version "1.91.1392"}}
+                      :main-opts   ["-m" "kaocha.runner"]}}}
+

projects/web/src/totp/db/datomic.clj

@@ -0,0 +1,68 @@
+(ns totp.db.datomic
+  (:require [totp.data :as data]
+            [datomic.client.api :as d]))
+
+
+(def cfg-path (data/join-path (System/getProperty "user.home") ".config" "totp"))
+(def db-path (str cfg-path java.io.File/separator "data"))
+
+(def cfg {:server-type :datomic-local
+          :system "local-data"
+          :storage-dir db-path})
+
+(def client (d/client cfg))
+
+;; Schema for our database
+
+(def totp-schema [{:db/ident :app/name
+                   :db/valueType :db.type/string
+                   :db/cardinality :db.cardinality/one
+                   :db/unique :db.unique/identity
+                   :db/doc "Unique name of the application. Between 2 and 32 chars"
+                   :db.attr/preds  (fn [s] (<= 3 (count s) 15))}
+                  {:db/ident :app/desc
+                   :db/valueType :db.type/string
+                   :db/cardinality :db.cardinality/one
+                   :db/doc "(optional) Description of the application"}
+                  {:db/ident :app/secret
+                   :db/valueType :db.type/string
+                   :db/cardinality :db.cardinality/one
+                   :db/doc "Secret BASE32"}
+                  {:db/ident :app/period
+                   :db/valueType :db.type/long
+                   :db/cardinality :db.cardinality/one
+                   :db/doc "Time slice in seconds (30 by default)"}
+                  {:db/ident :app/config
+                   :db/valueType :db.type/string
+                   :db/cardinality :db.cardinality/one
+                   :db/doc "(Optional) Extra config"}
+
+                  {:db/ident :user/login
+                   :db/valueType :db.type/string
+                   :db/cardinality :db.cardinality/one
+                   :db/unique :db.unique/identity
+                   :db/doc "Identifier for the user"}
+                  {:db/ident :user/passwd
+                   :db/valueType :db.type/string
+                   :db/cardinality :db.cardinality/one
+                   :db/doc "Password"}
+                  {:db/ident :user/active
+                   :db/valueType :db.type/boolean
+                   :db/cardinality :db.cardinality/one
+                   :db/doc "Is the user active?"}
+                  {:db/ident :user/desc
+                   :db/valueType :db.type/string
+                   :db/cardinality :db.cardinality/one
+                   :db/doc "(Optional) Description of the user"}
+                  {:db/ident :user/config
+                   :db/valueType :db.type/string
+                   :db/cardinality :db.cardinality/one
+                   :db/doc "(Optional) Extra config"}
+                  {:db/ident :user/apps
+                   :db/valueType :db.type/ref
+                   :db/cardinality :db.cardinality/many
+                   :db/doc "Applications for this user"}])
+
+(defn init-db
+  [client]
+  (d/create-database client {:db-name "totp"}))

projects/web/src/totp/db/sqlite.clj

@@ -0,0 +1,23 @@
+(ns totp.db.sqlite
+  (:require [next.jdbc :as jdbc]))
+
+;; DB configuration
+(def db {:dbname "totp-data.sqlite"
+         :dbtype "sqlite"})
+
+;; DB parsed config
+(def data-source (jdbc/get-datasource db))
+
+(defn init-db
+  "Create an empty DB"
+  []
+  (jdbc/execute! data-source ["
+  create table apps (
+    id int auto_increment primary key,
+    name varchar(32),
+    desc varchar(255)
+  )"]))
+
+(comment 
+  (init-db)
+  )

projects/web/tests.edn

@@ -0,0 +1 @@
+#kaocha/v1 {}

tests.edn

@@ -1 +1,6 @@
-#kaocha/v1 {}
+#kaocha/v1
+ {:tests [{:test-paths ["projects/core/src" "projects/core/test"]}]
+  :plugins [:kaocha.plugin/cloverage]
+  :cloverage/opts {:src-ns-path ["projects/core/src" "projects/core/test"]
+                   :ns-regex ["totp\\..*(?<!test)$"] ;; All starting with "totp" but not ending by "test"
+                   }}