cleaning temporary files

collect-deps.sh

@@ -1 +1,11 @@
-~/.sdkman/candidates/java/21.0.2-graalce/bin/java -agentlib:native-image-agent=config-output-dir=META-INF/native-image -jar target/clj-topt-1.0.32-standalone.jar g TUGOBTEHPSCMUCYAT6UPELNWGE -c
+#!/usr/bin/env sh
+
+JAVA_CMD=~/.sdkman/candidates/java/21.0.2-graalce/bin/java
+UBERJAR=$(realpath --relative-to=. target/clj-totp-cli-*-standalone.jar)
+
+echo "Using uberjar $UBERJAR"
+
+$JAVA_CMD -agentlib:native-image-agent=config-output-dir=target/native-image\
+ -jar $UBERJAR import "deleteme" "otpauth-migration://offline?data=CkkKEJ0M4MyHfITKCwCfqPIttjESFHJ1YmVuY2pAMThCMTY5RDVGRjAwGgRTTldMIAEoATACQhMzYjkxMDQxNzI3NzgzNDIzNDYyEAIYASAA" 
+
+java -jar $UBERJAR delete "deleteme"

compile_proto.sh

@@ -1,4 +0,0 @@
-#!/bin/env sh
-
-protoc --java_out projects/core/java/protoc/ projects/core/resources/proto/otpauth-migration.proto
-#javac -cp resources/protobuf-java-3.25.8.jar -d target/classes/proto src/OtpauthMigration.java

deps.edn

@@ -53,7 +53,7 @@
                        :ns-default build
                        :exec-fn jar
                        :exec-args {:subproj "gui"}}
-
+           
            ;; Build the three libraries
            :build/all {:deps {io.github.clojure/tools.build {:mvn/version "0.10.10"}}
                        :replace-deps {clj-totp/core {:local/root "projects/core"}}
@@ -64,5 +64,11 @@
            :uber/cli {:deps {io.github.clojure/tools.build {:mvn/version "0.10.10"}}
                       :ns-default build
                       :exec-fn uber
-                      :exec-args {:subproj "cli" :main-ns "totp.app"}}}}
+                      :exec-args {:subproj "cli" :main-ns "totp.app"}}
+           
+           ;; Build uber jar for CLI app
+           :uber/gui {:deps {io.github.clojure/tools.build {:mvn/version "0.10.10"}}
+                      :ns-default build
+                      :exec-fn uber
+                      :exec-args {:subproj "gui" :main-ns "totp.app"}}}}
 

native_cli.sh

@@ -4,8 +4,10 @@ NATIVE=~/.sdkman/candidates/java/21.0.2-graalce/bin/native-image
 BIN_FILE=totp
 
 echo "Creating uberjar"
-clojure -T:build uber
-UBERJAR=$(realpath --relative-to=target target/clj-totp-*-standalone.jar)
+#clojure -T:uber/cli
+UBERJAR=$(realpath --relative-to=target target/clj-totp-cli-*-standalone.jar)
+
+echo "Using uberjar $UBERJAR"
 
 echo "Creating native image"
 $NATIVE -jar target/$UBERJAR -o target/$BIN_FILE\
@@ -17,10 +19,13 @@ $NATIVE -jar target/$UBERJAR -o target/$BIN_FILE\
     --strict-image-heap\
     -march=native\
     -R:MaxHeapSize=10m\
+    --trace-object-instantiation=java.lang.Thread\
     --initialize-at-build-time=org.fusesource.jansi.Ansi\
     --initialize-at-build-time='org.fusesource.jansi.Ansi$Color'\
     --initialize-at-build-time='org.fusesource.jansi.Ansi$Attribute'\
-    '--initialize-at-build-time=org.fusesource.jansi.Ansi$1'
+    --initialize-at-build-time='org.fusesource.jansi.Ansi$1'\
+    --initialize-at-run-time=cljc_long.constants__init
+    
 
 echo "Executable created on target/$BIN_FILE"
 cp target/$BIN_FILE ~/bin

projects/cli/deps.edn

@@ -3,7 +3,8 @@
            org.clojure/clojure                 {:mvn/version "1.12.1"}
            cli-matic/cli-matic                 {:mvn/version "0.5.4"}   ;; https://github.com/l3nz/cli-matic
            ;; Progress bar
-           com.github.pmonks/spinner           {:mvn/version "2.0.284"}}
+           com.github.pmonks/spinner           {:mvn/version "2.0.284"}
+           com.github.clj-easy/graal-build-time {:mvn/version "1.0.5"}}
 
  :aliases {;; Execute the app
            ;:run      {:main-opts   ["-m" "totp.app"]}

projects/core/.cpcache/425892293.main

@@ -1,2 +0,0 @@
--m
-kaocha.runner

projects/core/deps.edn

@@ -3,6 +3,8 @@
            mvxcvi/alphabase                    {:mvn/version "3.0.185"} ;; https://github.com/greglook/alphabase
            ;; Protobuf for java
            com.google.protobuf/protobuf-java   {:mvn/version "3.25.8"}
+           ;; Dynamic protobuf
+           com.github.s-expresso/clojobuf      {:mvn/version "0.2.1"}
            }
 
  :aliases {;; Kaocha runner. You can use the 'kaocha' wrapper located in ~/bin/kaocha

projects/core/src/totp/data.clj

@@ -1,11 +1,11 @@
 (ns totp.data
-  (:require [clojure.edn :as e]
+  (:require [totp.otp-proto :as proto]
+            [clojure.edn :as e]
             [clojure.string :as str]
             [clojure.java.io :as io]
             [clojure.pprint :as pp]
             [alphabase.base64 :as b64]
-            [alphabase.base32 :as b32])
-  (:import [protoc OtpauthMigration$MigrationPayload]))
+            [alphabase.base32 :as b32]))
 
 (defn join-path
   "Joins several subpaths using system's path separator (/ un *NIX and \\ in windows)"
@@ -207,28 +207,26 @@
   (when (some? url)
     (let [b64-data   (second (str/split url #"=" -1))
           data-b     (b64/decode b64-data)
-          parsed     (OtpauthMigration$MigrationPayload/parseFrom data-b)
-          payload    (bean (.getOtpParameters parsed 0))
-          ;{:keys [name secret name issuer digitsValue algorithmValue typeValue]} payload
-          secret-b   (:secret payload)
-          secret     (b32/encode (.toByteArray secret-b))
+          payload    (proto/parse-data data-b)
+          ;{:keys [name secret name issuer digits algorithm type]} payload
+          secret     (:secret payload)
           user       (:name payload)
           issuer     (:issuer payload)
-          algorithm  (case (:algorithmValuei payload) 2 "sha256" 3 "sha512" "sha1")
-          digits     (case (:digitsValue payload) 2 8 6)
-          valid-type (= 2 (:typeValue payload))
+          algorithm  (:algorithm payload)
+          digits     (:digits payload)
+          valid-type (= 2 (:type payload))
           ]
-      (println "name:" name "user:" user "issuer:" issuer "digitsValue:" digits "algorithm:" algorithm "valid type?" valid-type)
+      ;(println "name:" name "user:" user "issuer:" issuer "digits:" digits "algorithm:" algorithm "valid type?" valid-type)
       (if valid-type
         (create-app name secret user issuer algorithm digits 30)
-        (println "Invalid OTP type" (:typeValue payload)))
+        (println "Invalid OTP type" (:type payload)))
       )))
 
 (comment
   (url-export->app "test"
-                    "otpauth-migration://offline?data=CkkKEJ0M4MyHfITKCwCfqPIttjESFHJ1YmVuY2pAMThCMTY5RDVGRjAwGgRTTldMIAEoATACQhMzYjkxMDQxNzI3NzgzNDIzNDYyEAIYASAA"
-                    )
+                   "otpauth-migration://offline?data=CkkKEJ0M4MyHfITKCwCfqPIttjESFHJ1YmVuY2pAMThCMTY5RDVGRjAwGgRTTldMIAEoATACQhMzYjkxMDQxNzI3NzgzNDIzNDYyEAIYASAA"
   )
+)
 
 
 

projects/core/src/totp/otp_import.clj

@@ -9,13 +9,19 @@
 ;; Original description of the export protocol uses Google's Protocol Buffers
 ;; https://protobuf.dev/
 
+(def WIRE_TYPES {:varint 0  ;; Integeres of variable length encoding
+                 :i64 1     ;; Fixed 64 bits numbers (integer or decimal)
+                 :len 2     ;; Block of bytes with a predefined length
+                 :sgroup 3  ;; Group end (deprecated)
+                 :egroup 4  ;; Group start (deprecated)
+                 :i32 5     ;; Fixed 32 bits number (integer or decimal)
+                 })   
+
 (comment
   (let [encoded "CkkKEJ0M4MyHfITKCwCfqPIttjESFHJ1YmVuY2pAMThCMTY5RDVGRjAwGgRTTldMIAEoATACQhMzYjkxMDQxNzI3NzgzNDIzNDYyEAIYASAA"
         decoded (b64/decode encoded)]
     (print (hex/encode decoded))
-    (print (b/to-string decoded))
-  )
-)
+    (print (b/to-string decoded))))
 
 
 (defn to-fancy-bin
@@ -44,42 +50,89 @@
 
        digits = ceil ( log_n ( x + 1 ) )
    "
-  [x n]
+  [n x]
   (case x
     nil 0 ;; nill is encoded with zero bytes
     0 1   ;; One block to zero
-    9223372036854775807 (len-bits (dec x) n) ;; Beware the overflow!! it's best to lose some precision
+    9223372036854775807 (len-bits n (dec x)) ;; Beware the overflow!! it's best to lose some precision
     (when (and (>= x 0) (some? n) (> n 0))
       (long (m/ceil (/ (m/log (inc x)) (m/log (m/pow 2 n))))))))
 
 (comment
-  (len-bits 513 8)
-  (len-bits Long/MAX_VALUE 8)
-  (len-bits (dec Long/MAX_VALUE) 8)
-  )
+  (len-bits 8 513)
+  (len-bits 8 Long/MAX_VALUE)
+  (len-bits 8 (dec Long/MAX_VALUE)))
 
 
 (defn len-bytes
   "How may bytes are needed to encode this number?"
   [x]
-  (len-bits x 8))
+  (len-bits 8 x))
 
 
 (defn integer>bytes
   "Converts an integer to a byte array"
   [x]
-  (when x (let [len (len-bytes x) 
+  (when x (let [len (len-bytes x)
                 hex-len (* 2 len)]
             (hex/decode (String/format (str "%0" hex-len "x") (into-array [x]))))))
 
 (comment
   (integer>bytes 513)
   10r3
-  3r10
-  )
+  3r10)
 
 
-(defn decimal-to-base
+(defn euclidean-quot
+  "Euclidean division for integers
+   
+   More info: https://en.wikipedia.org/wiki/Euclidean_division
+   "
+  [a b]
+  (when (zero? b)
+    (throw (IllegalArgumentException. "You can't divide by zero!")))
+  (let [b-abs (Math/abs b)
+        r     (mod a b-abs)] ;; 0 <= r < |b|
+    (quot (- a r) b)         ;; adjusts quotient with the positive remainder 
+    ))
+
+
+(defn euclidean-rem
+  "Modulus for euclidean division for integers
+   
+   More info: https://en.wikipedia.org/wiki/Euclidean_division
+   "
+  [a b]
+  (when (zero? b)
+    (throw (IllegalArgumentException. "You can't divide by zero!")))
+  (let [b-abs (Math/abs b)]
+    (mod a b-abs);; 0 <= r < |b|
+    ))
+
+
+(defn euclid-div
+  "Euclidean division. Returns quotient and remainder as a map. The remainder is
+   allways a positive number.
+   
+   More info: https://en.wikipedia.org/wiki/Euclidean_division"
+  [a b]
+  (when (zero? b)
+    (throw (IllegalArgumentException. "You can't divide by zero!")))
+  (let [b-abs (Math/abs b)
+        r     (mod a b-abs)        ;; 0 <= r < |b|
+        q     (quot (- a r) b)]    ;; adjusts quotient with the positive remainder 
+    {:q q :r r}))
+
+
+(comment
+  (euclid-div 7 3)
+  (euclid-div -7 3)
+  (euclid-div 7 -3)
+  (euclid-div -7 -3))
+
+
+
+(defn decimal->base
   "Converts a decimal number to an arbitrary base. Each digit is encoded as an 
    integer with value between 0 and base-1.
    
@@ -99,41 +152,81 @@
          1 / 5 =  0 rem 1
    
    so, 127 in base 5 is 1002.
+
+   The maximum digits this method can return is 65. Max size for a long is base 2
+   is 64, so if you obtain a result with 65 digits is very probable that the
+   conversion has failed.
+
+   If the number is negative and the base is possitive, we return the conversion
+   of the absolute value. You must take care of the sign in your implementation.
+       
+   There are negative bases as -2 that can encode possitive and negative numbers.
    "
-  ([n base]
-   (decimal-to-base n base true))
-  ([n base reverse?]
-   (if (or (nil? n) (nil? base) (zero? n) (zero? base)) ;; Allways [0] for base zero or number zero
-     [0]
+  ([base n]
+   (decimal->base base n true))
+  ([base n reverse?]
+   (if (or (nil? n) (nil? base) (zero? n) (zero? base))
+     [0] ;; Allways [0] for base zero or number zero
      (loop [acc []
-            x n]
-       (if (zero? x)
-         (vec (if reverse? (reverse acc) acc)) ;; When x is zero, we have finished
-         (recur
-          (conj acc (rem x base)) ;; Accumulate the remainder
-          (quot x base)))))))      ;; Pass the quotient to the next step
+            x (if (and (< n 0) (> base 0)) (abs n) n)] ;; If n < 0 and b > 0 => |n|, else n
+       (let [q (euclidean-quot x base)
+             r (euclidean-rem x base)]
+         ;;(printf "Acc: %s Calculating: %s/%s -> %s rem %s%n" acc x base q r)
+         (if (or (zero? x) (> (count acc) (inc Long/SIZE))) ;; max digits is 65
+           (vec (if reverse? (reverse acc) acc)) ;; When x is zero, we have finished
+           (recur
+            (conj acc r) ;; Accumulate the remainder
+            q            ;; Pass the quotient to the next step
+            )))))))
 
 (comment
-  (decimal-to-base 8 2)
+  (decimal->base 2 8)
   2r1000
-  )
+  (decimal->base 2 3)
+
+  (letfn [(step [x b name q r]
+            (printf "%s -> %d/%d = %d rem %d%n" name x b q r))
+          (examples [x b exp-q exp-r]
+            (step x b "EXPECTED   " exp-q exp-r)
+            (step x b "IEEE       " (int (m/IEEE-remainder x b)) (rem x b))
+            (step x b "With rem   " (quot x b) (rem x b))
+            (step x b "With mod   " (quot x b) (mod x b))
+            (step x b "floor      " (m/floor-div x b) (m/floor-mod x b))
+            (step x b "Manual 1   " (int (clojure.math/round (double (/ x b)))) (rem x b))
+            (step x b "Manual 2   " (int (clojure.math/rint (double (/ x b)))) (rem x b))
+            (step x b "Unchecked  " (unchecked-divide-int x b) (unchecked-remainder-int x b))
+            (step x b "Euclidean  " (euclidean-quot x b) (euclidean-rem x b)))]
+    (examples -3 -2 2 1)
+    (println)
+    (examples 2 -2 -1 0)
+    (println)
+    (examples -1 -2 1 1)
+    (println)
+    (examples 1 -2 0 1)
+    (println)
+    (println)
+    (examples 7 3 2 1)
+    (println)
+    (examples -7 3 -3 2)
+    (println)
+    (examples 7 -3 -2 1)
+    (println)
+    (examples -7 -3 3 2)))
 
 
-(defn base-to-decimal
+(defn base->decimal
   "Converts from an array with values in an arbitrary base into decimal values"
-  [n base]
+  [base n]
   (if (or (nil? n) (nil? base) (zero? (count n)))
     0
     (long (reduce-kv
-          (fn [acc k v]
-            (+ acc (* v (m/pow base k))))
-          0 (vec (reverse n))))))
+           (fn [acc k v]
+             (+ acc (* v (m/pow base k))))
+           0 (vec (reverse n))))))
 
 (comment
   (reduce-kv #(+ %1 (* %3 (m/pow 2 %2))) 0 [1 0 0 0]) ;; backwards!
-
-  (base-to-decimal [1 0 0 0] 2)
-  )
+  (base->decimal 2 [1 0 0 0]))
 
 
 (defn int->varint
@@ -151,7 +244,7 @@
    The result is a byte array.
    "
   [x]
-  (let [b128 (decimal-to-base x 128 false)]
+  (let [b128 (decimal->base 128 x false)]
     (byte-array (conj
                  (vec (map #(bit-or 2r10000000 %)  (butlast b128)))
                  (bit-and 2r01111111 (peek b128))))))
@@ -174,7 +267,8 @@
        00000000 10010110  -> fill the bytes
    "
   [x]
-  (base-to-decimal (reverse  (map #(bit-and 2r01111111 %) x)) 128))
+  (base->decimal 128 (reverse (map #(bit-and 2r01111111 %) x))))
+
 
 (comment
   ;; 150
@@ -183,38 +277,109 @@
   (to-fancy-bin (reverse (map #(bit-and 2r01111111 %) [-106, 1])))
   (varint->int [-106, 1])
 
-  ;; Long/MAX_VALUE
-  (to-fancy-bin (map #(bit-and 2r01111111 %) [-1, -1, -1, -1, -1, -1, -1, -1, 128]))
-  (varint->int [-2, -1, -1, -1, -1, -1, -1, -1, 127])
-  )
-
-
-
-
-(comment
-  (hex/decode (String/format "%08x" (into-array [1023])))
-
-  (to-fancy-bin [150])
-
-  (to-fancy-bin (int->varint 150))
-  (to-fancy-bin (int->varint 151))
-
-  (to-fancy-hex (int->varint 150))
-  (to-fancy-hex (int->varint 151) 4)
-
   (varint->int [-106, 1])
   (varint->int [-105, 1])
 
-  (to-fancy-bin (int->varint Long/MAX_VALUE))
-  (to-fancy-bin (int->varint (dec Long/MAX_VALUE)))
+  ;; Long/MAX_VALUE
+  (to-fancy-bin (map #(bit-and 2r01111111 %) [-1, -1, -1, -1, -1, -1, -1, -1, 128]))
+  (varint->int [-2, -1, -1, -1, -1, -1, -1, -1, 127]))
 
-  (to-fancy-hex (int->varint (dec Long/MAX_VALUE)))
 
-  (varint->int [-2, -1, -1, -1, -1, -1, -1, -1, 127])
+(defn more-blocks?
+  "True if the MSB bit is 1"
+  [b]
+  (when b
+    (< 0 (bit-and 2r10000000 b))))
 
-  (to-fancy-bin [2r10010110 2r00000001])
-
-  [2r10010110 2r00000001]
-  [2r0010110 2r0000001]
+(comment
+  (bit-and 2r10000000 2r10000001)
+  (bit-and 2r10000000 2r00000001)
+  ( more-blocks? 2r10000001)
+  (more-blocks? 2r00000001)
   )
 
+
+(defn extract-varint-blocks
+  "Group varints in a byte array"
+  [bytes]
+  (loop [acc []   ;; Groups of varints
+         group [] ;; Current varint
+         r bytes] ;; Current tested byte
+    (if (empty? r) ;; Final condition: no more bytes to test
+      (if ((complement empty?) group)
+        (conj acc group) ;; Return acc with the last group added if not empty
+        acc)             ;; if empty, return acc
+      (if (more-blocks? (first r))
+        ;; If more blocks remains:
+        (recur acc
+               (conj group (first r)) ;; add current byte to current group
+               (next r))
+        ;; If it's last in varint:
+        (recur (->> (first r)
+                    (conj group) ;; add byte to group
+                    (conj acc))  ;; add group to accumulator
+               []                ;; and start a new empty group
+               (next r))))))
+
+(comment  
+  (extract-varint-blocks [2r11111111 2r01111111, 2r10000001 2r10101001 2r00000001, 2r00000111])
+  )
+
+
+(defn extract-varints
+  "Group varints in an byte array and convert them to decimal"
+  [bytes]
+  (map varint->int (extract-varint-blocks bytes)))
+
+(comment 
+  (extract-varints [2r11111111 2r01111111, 2r10000001 2r10101001 2r00000001, 2r00000111])
+
+  (varint->int [2r11111111 2r01111111])
+  (varint->int [2r10000001 2r10101001 2r00000001])
+  (varint->int [2r00000111])
+  )
+
+
+(defn bytes->len-type
+  "Prepend byte array with length in varint format"
+  [bytes]
+  (concat (int->varint (count bytes))
+          bytes))
+
+(comment 
+  (to-fancy-hex (bytes->len-type (.getBytes "testing")))
+  )
+
+
+(defn pack-bytes-as-tlv
+  "Pack the value as TLV.
+   
+   Type can one of those 6 IDs:
+   ID	Name	  Used For
+   0	VARINT	int32, int64, uint32, uint64, sint32, sint64, bool, enum
+   1	I64	    fixed64, sfixed64, double
+   2	LEN	    string, bytes, embedded messages, packed repeated fields
+   3	SGROUP	group start (deprecated)
+   4	EGROUP	group end (deprecated)
+   5	I32	    fixed32, sfixed32, float
+   "
+  ([{:keys [field type value]}]
+   (pack-bytes-as-tlv field type value))
+  ([field-number type value]
+   (let [field-displaced (bit-shift-left field-number 3)
+         tag (int->varint (bit-or field-displaced type))]
+     (concat tag value))))
+
+
+(defn unpack-tlv-bytes
+  "Returns a map with 3 pairs:
+   - :field is the field number
+   - :type is one of the values of WIRE_TYPES
+   - :value is the byte array with the payload"
+  [packed]
+  (let [first-byte (bit-and 2r01111111 (first packed)) ;; bye bye, MSB
+        type (bit-and 2r00000111 first-byte)
+        field-number (bit-shift-right first-byte 3)]
+    {:field field-number :type type :value (rest packed)}))
+
+

projects/core/src/totp/otp_proto.clj

@@ -0,0 +1,45 @@
+(ns totp.otp-proto
+  (:require [clojobuf.core :refer [protoc decode]]
+            [alphabase.base64 :as b64]
+            [alphabase.base32 :as b32]))
+
+
+;; Where lookup for proto files
+(def registry (protoc ["resourcse/proto/"
+                       "projects/core/resources/proto/"]
+                      ["otpauth-migration.proto"]))
+
+
+(defn parse-data
+  [binary-data]
+  (let [decoded (decode registry :MigrationPayload binary-data)
+        msg (get-in decoded [:otp_parameters 0])]
+    ;(println "Decoded:" msg)
+    (when msg
+      {:secret (b32/encode (:secret msg))
+       :name (:name msg)
+       :issuer (:issuer msg)
+       :algorithm (case (:algorithm msg)
+                    :ALGORITHM_SHA256 "sha256"
+                    :ALGORITHM_SHA512 "sha512"
+                    :ALGORITHM_MD5 "md5"
+                    "sha1") ;; sha1 by default
+       :digits (case (:digits msg)
+                 :DIGIT_COUNT_EIGHT 8
+                 6) ;; 6 digits by default
+       :type (case (:type msg)
+               :OTP_TYPE_UNSPECIFIED 0
+               :OTP_TYPE_HOTP 1
+               :OTP_TYPE_TOTP 2) ;; Only TOTP is supported
+       })))
+
+
+(comment
+  (let [b64-data "CkkKEJ0M4MyHfITKCwCfqPIttjESFHJ1YmVuY2pAMThCMTY5RDVGRjAwGgRTTldMIAEoATACQhMzYjkxMDQxNzI3NzgzNDIzNDYyEAIYASAA"
+        bin-data (b64/decode b64-data)
+        decoded (decode registry :MigrationPayload bin-data)]
+    ;(get-in decoded [:otp_parameters 0])
+    (parse-data bin-data)
+    )
+  )
+

projects/core/target/clj-totp.sh

@@ -1,8 +0,0 @@
-#!/usr/bin/env sh
-
-JAVA_EXECUTABLE=java
-UBER_JAR=$(realpath clj-totp-*-standalone.jar)
-OPTS="-Xms256m -Xmx256m -client -Dclojure.spec.skip-macros=true"
-
-
-$JAVA_EXECUTABLE $OPTS -jar $UBER_JAR $@

projects/core/test/totp/otp_import_test.clj

@@ -11,14 +11,14 @@
 
 (deftest len-bits-test
   (testing "Check required number of blocks to encode a number in n bits"
-    (is (nil? (len-bits 10 nil)))
-    (is (= 0 (len-bits nil 10)))
-    (is (= 1 (len-bits 1 2)))
-    (is (= 2 (len-bits 10 2)))
-    (is (= 2 (len-bits 15 2)))
-    (is (= 3 (len-bits 16 2)))
-    (is (= 1 (len-bits 255 8)))
-    (is (= 2 (len-bits 255 7)))
+    (is (nil? (len-bits nil 10)))
+    (is (= 0 (len-bits 10 nil)))
+    (is (= 1 (len-bits 2 1)))
+    (is (= 2 (len-bits 2 10)))
+    (is (= 2 (len-bits 2 15)))
+    (is (= 3 (len-bits 2 16)))
+    (is (= 1 (len-bits 8 255)))
+    (is (= 2 (len-bits 7 255)))
     )
   )
 
@@ -49,49 +49,40 @@
 )
 
 
-(deftest decimal-to-base-test
+(deftest decimal->base-test
   (testing "Convert from decimal base to an arbitrary base"
-    (is (= [0] (decimal-to-base 10 nil)))
-    (is (= [0] (decimal-to-base nil 10)))
-    (is (= [0] (decimal-to-base 0 2)))
-    (is (= [0] (decimal-to-base 2 0)))
-    (is (= [1 0 0 0] (decimal-to-base 8 2)))
-    (is (= [2 2] (decimal-to-base 8 3)))
-    (is (= [2 0] (decimal-to-base 8 4)))
-    (is (= [1 3] (decimal-to-base 8 5)))
-    (is (= [3 1] (decimal-to-base 8 5 false)))
-    (is (= [0] (decimal-to-base 0 5)))
-    )
+    (is (= [0] (decimal->base nil 10)))
+    (is (= [0] (decimal->base 10 nil)))
+    (is (= [0] (decimal->base 2 0)))
+    (is (= [0] (decimal->base 0 2)))
+    (is (= [1 0 0 0] (decimal->base 2 8)))
+    (is (= [2 2] (decimal->base 3 8)))
+    (is (= [2 0] (decimal->base 4 8)))
+    (is (= [1 3] (decimal->base 5 8)))
+    (is (= [3 1] (decimal->base 5 8 false)))
+    (is (= [0] (decimal->base 5 0)))
   )
+)
 
 
-(deftest base-to-decimal-test
+(deftest base->decimal-test
   (testing "Convert from arbitrary base to decimal"
-    (is (zero? (base-to-decimal nil 2)))
-    (is (zero? (base-to-decimal [] 2)))
-    (is (zero? (base-to-decimal [1] nil)))
-    (is (= 8 (base-to-decimal [1 0 0 0] 2)))
-    (is (= 8 (base-to-decimal [2 2] 3)))
-    (is (= 8 (base-to-decimal [2 0] 4)))
-    (is (= 8 (base-to-decimal [1 3] 5)))
-    )
+    (is (zero? (base->decimal 2 nil)))
+    (is (zero? (base->decimal 2 [])))
+    (is (zero? (base->decimal nil [1])))
+    (is (= 8 (base->decimal 2 [1 0 0 0])))
+    (is (= 8 (base->decimal 3 [2 2])))
+    (is (= 8 (base->decimal 4 [2 0])))
+    (is (= 8 (base->decimal 5 [1 3])))
   )
+)
 
 
-(deftest decimal-base-decimal-test
+(deftest decimal->base-decimal-test
   (testing "Check if convert from decimal to a base and back preserves the original number"
-    (is (= 8 (base-to-decimal (decimal-to-base 8 2) 2)))
-    (is (= 127 (base-to-decimal (decimal-to-base 127 2) 2)))
-    (is (= 417 (base-to-decimal (decimal-to-base 417 13) 13)))
-))
-
-
-
-(deftest int->varint-test
-  (testing "Convert from integer number (int, long, byte, etc) to varint"
-    (is (Arrays/equals (byte-array [0]) (int->varint nil)))
-    (is (Arrays/equals (byte-array [0]) (int->varint 0)))
-    (is (Arrays/equals (byte-array [2r10010110 2r00000001]) (int->varint 150)))
+    (is (= 8 (base->decimal 2 (decimal->base 2 8))))
+    (is (= 127 (base->decimal 2 (decimal->base 2 127))))
+    (is (= 417 (base->decimal 13 (decimal->base 13 417))))
   )
 )
 
@@ -120,5 +111,39 @@
   (testing "Convert from int to varint and back to int"
     (is (= 150 (varint->int (int->varint 150))))
     (is (= 151 (varint->int (int->varint 151))))
+  )
+)
+
+
+(deftest more-blocks?-test
+  (testing "Check if there are more blocks in a varint type"
+    (is (nil? (more-blocks? nil)))
+    (is (true?  (more-blocks? 2r10000001)))
+    (is (true?  (more-blocks? 2r11111111)))
+    (is (false? (more-blocks? 2r00000001)))
+    (is (false? (more-blocks? 2r01111111)))
+  )
+)
+
+(deftest extract-varint-blocks-test
+  (testing "Group varints"
+    (is (empty? (extract-varint-blocks nil)))
+    (is (empty? (extract-varint-blocks [])))
+    (is (= [[2r00000111]] (extract-varint-blocks [2r00000111])))
+    (is (= [[2r00000111] [2r00000111]] (extract-varint-blocks [2r00000111 2r00000111])))
+    (is (= [[2r11111111 2r01111111] [2r10000001 2r10101001 2r00000001] [2r00000111]] (extract-varint-blocks [2r11111111 2r01111111, 2r10000001 2r10101001 2r00000001, 2r00000111])))
+    (is (= [[2r11111111 2r01111111] [2r10000001 2r10101001 2r00000001] [2r10000111]] (extract-varint-blocks [2r11111111 2r01111111, 2r10000001 2r10101001 2r00000001, 2r10000111])))
     )
-)
+  )
+
+(deftest extract-varints-test
+  (testing "bytes with varints to decimal"
+    (is (empty? (extract-varints nil)))
+    (is (empty? (extract-varints [])))
+    (is (= [7] (extract-varints [2r00000111])))
+    (is (= [7 7] (extract-varints [2r00000111 2r00000111])))
+    (is (= [16383 21633 7] (extract-varints [2r11111111 2r01111111, 2r10000001 2r10101001 2r00000001, 2r00000111])))
+    (is (= [16383 21633 7] (extract-varints [2r11111111 2r01111111, 2r10000001 2r10101001 2r00000001, 2r10000111])))
+  )
+)
+

projects/gui/deps.edn

@@ -2,6 +2,7 @@
  :deps    {;;org.clojure/clojure {:mvn/version "1.12.1"}
            cli-matic/cli-matic {:mvn/version "0.5.4"}   ;; https://github.com/l3nz/cli-matic
            ;; GUI
-           seesaw/seesaw {:mvn/version "1.5.0"}}
+           seesaw/seesaw {:mvn/version "1.5.0"}
+           com.github.clj-easy/graal-build-time {:mvn/version "1.0.5"}}
 }
 

projects/gui/src/totp/gui.clj

@@ -7,29 +7,8 @@
             [seesaw.mig :refer :all]
             [seesaw.clipboard :as cp]
             [seesaw.dev :refer :all])
-  (:import [java.util Date TimerTask Timer]))
-
-
-
-(defn content-test
-  []
-  (let [choose (fn [e] (alert "I should open a file chooser"))]
-    (flow-panel
-     :items ["File"                                 [:fill-h 5]
-             (text (System/getProperty "user.dir")) [:fill-h 5]
-             (action :handler choose :name "...")])))
-
-
-(defn content-test2
-  [name category date comment]
-  (mig-panel
-   :constraints ["wrap 2"
-                 "[shrink 0]20px[200, grow, fill]"
-                 "[shrink 0]5px[]"]
-   :items [["name:"] [(text (or name     ""))]
-           ["category:"] [(text (or category ""))]
-           ["date:"] [(text (or date     ""))]
-           ["comment:"] [(text (or comment  ""))]]))
+  (:import [java.util Date TimerTask Timer])
+  (:gen-class))
 
 
 (defn copy-handler
@@ -37,36 +16,34 @@
   [field-id e]
   (let [b-name (str "#" field-id)
         b-obj (select (to-root e) [(keyword b-name)])
-        b-text (config b-obj :text)] 
+        b-text (config b-obj :text)]
     (println "Copying text value: " b-text)
-    (cp/contents! b-text)
-  ))
+    (cp/contents! b-text)))
 
 
 (defn make-otp-list
   "Make panel with OTPs"
   []
-  (mig-panel
-   :constraints ["wrap 3"
-                 "[shrink 0]20px[200, grow, fill]10px[shrink 0]"]
-   :items (let [apps (with-config (filter some? #_{:clj-kondo/ignore [:unresolved-symbol]} cfg))
-                ]
-            (reduce (fn [acc a]
-                      (let [{:keys [name secret algorithm digits period]} a
-                            field-id (str "field-totp-" name)]
-                        (-> acc
-                            (conj [name])
-                            (conj [(text :text (get-otp secret algorithm digits period)
-                                         :editable? false
-                                         :id field-id)])
-                            (conj [(action :name "copy" 
-                                           :handler (partial copy-handler field-id) 
-                                           :command (str "cmd-" name))]))))
-                    [] apps))))
+  (scrollable
+   (mig-panel
+    :constraints ["wrap 3"
+                  "[shrink 0]20px[200, grow, fill]10px[shrink 0]"]
+    :items (let [apps (with-config (filter some? #_{:clj-kondo/ignore [:unresolved-symbol]} cfg))]
+             (reduce (fn [acc a]
+                       (let [{:keys [name secret algorithm digits period]} a
+                             field-id (str "field-totp-" name)]
+                         (-> acc
+                             (conj [name])
+                             (conj [(text :text (get-otp secret algorithm digits period)
+                                          :editable? false
+                                          :id field-id)])
+                             (conj [(action :name "copy"
+                                            :handler (partial copy-handler field-id)
+                                            :command (str "cmd-" name))]))))
+                     [] apps)))))
 
 (comment
-  (make-otp-list)
-  )
+  (make-otp-list))
 
 
 (defn make-time-bar
@@ -76,21 +53,47 @@
    :hgap 5
    :center (progress-bar :id "timer-bar"
                          :value init-val
-                         :max 30)
+                         :max 30
+                         :paint-string? true)
    :east   (text :id "timer-text"
                  :text init-val
                  :editable? false
                  :columns 2
-                 :halign :right)
-  ))
+                 :halign :right)))
+
+
+(defn make-add-frame
+  [parent]
+  (frame :title "Add new TOTP"
+         :minimum-size [320 :by 200]
+         :size [320 :by 220]
+         :on-close :dispose
+         :content (border-panel
+                   :center (mig-panel
+                            :constraints ["wrap 2"
+                                          "[shrink 0]20px[200, grow, fill]"]
+                            :items [["Name"] [(text :id "add-name" :columns 32)]
+                                    ["Secret (B32)"] [(text :id "add-secret" :columns 32)]
+                                    ["User (optional)"] [(text :id "add-user" :columns 32)]
+                                    ["Issuer (optional)"] [(text :id "add-issuer" :columns 32)]
+                                    ["Algorithm"] [(combobox :model ["sha1" "sha256" "sha512"])]
+                                    ["Digits"] [(combobox :model ["6" "8"])]])
+                   :south (flow-panel :align :right :items [(action :name "Cancel")
+                                                            (action :name "Add")]))))
+
+
+(defn make-main-buttons
+  []
+  (flow-panel :align :right
+              :items ["button a" "button b"]))
 
 
 (defn make-frame-content
   []
   (border-panel :hgap 10 :vgap 10
                 :center (make-otp-list)
-                :north  (make-time-bar (int(/ (calculate-offset-millis 30) 1000)))
-                ;:south  "SOUTH"
+                :north  (make-time-bar (int (/ (calculate-offset-millis 30) 1000)))
+                :south  (make-main-buttons)
                 ;:east   "EAST"
                 ;:west   "WEST"
                 ))
@@ -106,6 +109,7 @@
          :on-close :dispose))
 
 
+
 (defn update-totps
   "Update all totps"
   [root]
@@ -115,7 +119,7 @@
             field-id (str "field-totp-" name)
             field (select root [(keyword (str "#" field-id))])
             current-otp (get-otp secret algorithm digits period)]
-        (println "Updating" field-id "with otp" current-otp)
+        ;;(println "Updating" field-id "with otp" current-otp)
         (config! field :text current-otp)))))
 
 
@@ -124,13 +128,12 @@
   (let [time-bar (select root [:#timer-bar])
         time-text (select root [:#timer-text])
         offset (inc (int (/ (calculate-offset-millis 30) 1000)))]
-    (println "Updating at at" (System/currentTimeMillis))
+    ;;(println "Updating at at" (System/currentTimeMillis))
     (config! time-bar :value offset)
     (config! time-text :text offset)
     (when (= 1 offset)
-      (println "update TOTP")
-      (update-totps root))
-  ))
+      ;;(println "update TOTP")
+      (update-totps root))))
 
 
 (defn start-updater
@@ -142,8 +145,8 @@
                     (proxy [TimerTask] []
                       (run [] (update-progress root)))
                     delay 1000))
-    (println "Now" now "Delay" delay)
-  ))
+    (println "Now" now "Delay" delay)))
+
 
 
 (defn -main [& args]
@@ -152,6 +155,7 @@
    (-> (make-frame)
        pack!
        show!
+       (make-add-frame)
        start-updater))
   (println "Gui started"))
 
@@ -163,4 +167,6 @@
   (show-options (frame))
   (show-options (text))
 
-  )
+  (-> (make-add-frame nil)
+      (pack!)
+      (show!)))

reflect_config.json.bak

@@ -0,0 +1,270 @@
+[
+  {
+    "name": "com.sun.crypto.provider.HmacSHA1",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "java.lang.reflect.Method",
+    "methods": [
+      {
+        "name": "canAccess",
+        "parameterTypes": [
+          "java.lang.Object"
+        ]
+      }
+    ]
+  },
+  {
+    "name": "java.util.Arrays",
+    "allDeclaredClasses": true,
+    "allPublicClasses": true,
+    "queryAllPublicMethods": true,
+    "methods": [
+      {
+        "name": "copyOfRange",
+        "parameterTypes": [
+          "byte[]",
+          "int",
+          "int"
+        ]
+      }
+    ]
+  },
+  {
+    "name": "java.util.Timer",
+    "queryAllPublicMethods": true,
+    "methods": [
+      {
+        "name": "scheduleAtFixedRate",
+        "parameterTypes": [
+          "java.util.TimerTask",
+          "long",
+          "long"
+        ]
+      }
+    ]
+  },
+  {
+    "name": "java.util.concurrent.locks.Lock"
+  },
+  {
+    "name": "java.util.concurrent.locks.ReentrantLock"
+  },
+  {
+    "name": "rubberbuf.ast_postprocess$eval194",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_postprocess$eval209",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_postprocess$eval224",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_postprocess$eval242",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_postprocess$eval331",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_postprocess__init"
+  },
+  {
+    "name": "rubberbuf.ast_preprocess$eval148",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_preprocess$eval15",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_preprocess$eval179",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_preprocess$eval254",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_preprocess$eval265",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_preprocess$eval279",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_preprocess$eval290",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_preprocess$eval301",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_preprocess$eval314",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_preprocess$eval321",
+    "methods": [
+      {
+        "name": "<init>",
+        "parameterTypes": []
+      }
+    ]
+  },
+  {
+    "name": "rubberbuf.ast_preprocess__init"
+  },
+  {
+    "name": "rubberbuf.ast_util__init"
+  },
+  {
+    "name": "rubberbuf.core__init"
+  },
+  {
+    "name": "rubberbuf.ebnf__init"
+  },
+  {
+    "name": "rubberbuf.parse__init"
+  },
+  {
+    "name": "rubberbuf.parse_textformat__init"
+  },
+  {
+    "name": "rubberbuf.util__init"
+  },
+{
+  "name":"clojobuf.constant__init"
+},
+{
+  "name":"clojobuf.core__init"
+},
+{
+  "name":"clojobuf.decode__init"
+},
+{
+  "name":"clojobuf.encode__init"
+},
+{
+  "name":"clojobuf.schema$eval367",
+  "methods":[{"name":"<init>","parameterTypes":[] }]
+},
+{
+  "name":"clojobuf.schema$eval396",
+  "methods":[{"name":"<init>","parameterTypes":[] }]
+},
+{
+  "name":"clojobuf.schema__init"
+},
+{
+  "name":"clojobuf.util__init"
+},
+{
+  "name":"clojobuf_codec.decode__init"
+},
+{
+  "name":"clojobuf_codec.deserialize__init"
+},
+{
+  "name":"clojobuf_codec.encode__init"
+},
+{
+  "name":"clojobuf_codec.io.reader.ByteReader"
+},
+{
+  "name":"clojobuf_codec.io.reader__init"
+},
+{
+  "name":"clojobuf_codec.io.writer.ByteWriter"
+},
+{
+  "name":"clojobuf_codec.io.writer__init"
+},
+{
+  "name":"clojobuf_codec.serialize__init"
+},
+{
+  "name":"clojobuf_codec.util__init"
+}
+]